Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
iscAIron-sulfur cluster assembly protein; Belongs to the HesB/IscA family. (113 aa)    
Predicted Functional Partners:
BMS_3375
Putative aminomethyltransferase.
 
 
 0.934
iscS
Putative cysteine desulfurase.
 
 
 0.755
BMS_2118
Putative cysteine desulfurase.
 
 
 0.740
nifS
Cysteine desulfurase.
  
 
 0.700
BMS_2288
Conserved hypothetical protein; Belongs to the glutaredoxin family. Monothiol subfamily.
 
 0.679
BMS_1239
Putative nitrogen fixation-related protein.
  
 
 0.598
BMS_2953
Putative chemotaxis-related protein (pseudogene); HMMPfam hit to PF00072, Response regulator receiver, score 7.1e-07.
  
 
 0.598
dnaK
Chaperone protein dnaK (HSP70); Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 
 0.568
BMS_1435
Putative peroxiredoxin/glutaredoxin family protein.
 
  
 0.564
BMS_1242
Putative ABC transport system, ATP-binding protein.
  
 
 0.534
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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