Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ntrCNitrogen regulation protein. (499 aa)    
Predicted Functional Partners:
BMS_2128
Putative transcriptional regulatory protein.
 
  
 
0.929
BMS_3383
Putative alkaline phosphatase synthesis sensor protein.
 
 
 
 0.817
rpoN
RNA polymerase sigma-54 factor (sigma-N); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.800
lspA
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
       0.762
BMS_0088
Putative two-component sensor kinase; Possible downstream translational starts.
 
 
 0.671
BMS_3384
Putative membrane protein.
       0.669
BMS_2531
Putative two-component sensor histidine kinase.
 
 
 0.622
BMS_2847
Putative C4-dicarboxylate transport sensor protein.
 
 
 0.580
BMS_1365
Putative two-component sensor histidine kinase.
 
 
 0.572
fliM
Flagellar motor switch protein FliM.
  
  
 0.570
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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