Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BMS_3403Putative membrane protein. (211 aa)    
Predicted Functional Partners:
BMS_2854
Putative regulatory protein.
  
 
 0.757
BMS_1518
Putative histidine kinase/response regulator fusion protein.
  
 
 0.746
BMS_3404
Putative soluble lytic murein transglycosylase.
  
    0.674
cheW
Putative chemotaxis protein.
  
 
 0.600
cheW-2
Positive regulator of CheA protein activity.
  
 
 0.600
BMS_2633
Putative chemotactic response, glutamate methyltransferase fusion protein.
  
 
 0.596
cheA
Chemotaxis two-component sensor kinase.
  
 
 0.587
BMS_3402
Putative ATP-binding Mrp family protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
       0.543
BMS_3401
Hypothetical protein.
       0.525
BMS_2496
Putative histidine kinase/response regulator fusion protein.
  
 
 0.472
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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