Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SCI_0235 | SCI_0777 | SCI_0235 | SCI_0777 | Glycerophosphodiester phosphdiesterase family protein. | Hypothetical protein. | 0.417 |
SCI_0235 | SCI_1105 | SCI_0235 | SCI_1105 | Glycerophosphodiester phosphdiesterase family protein. | Hypothetical protein. | 0.418 |
SCI_0235 | dltA | SCI_0235 | SCI_1892 | Glycerophosphodiester phosphdiesterase family protein. | Putative D-alanine-poly(phosphoribitol) ligase subunit 1; Catalyzes the first step in the D-alanylation of lipoteichoic acid (LTA), the activation of D-alanine and its transfer onto the D- alanyl carrier protein (Dcp) DltC. In an ATP-dependent two-step reaction, forms a high energy D-alanyl-AMP intermediate, followed by transfer of the D-alanyl residue as a thiol ester to the phosphopantheinyl prosthetic group of the Dcp. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall. Bel [...] | 0.424 |
SCI_0235 | dltC | SCI_0235 | SCI_1890 | Glycerophosphodiester phosphdiesterase family protein. | D-alanine--poly(phosphoribitol) ligase subunit 2; Carrier protein involved in the D-alanylation of lipoteichoic acid (LTA). The loading of thioester-linked D-alanine onto DltC is catalyzed by D-alanine--D-alanyl carrier protein ligase DltA. The DltC- carried D-alanyl group is further transferred to cell membrane phosphatidylglycerol (PG) by forming an ester bond, probably catalyzed by DltD. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall. | 0.599 |
SCI_0235 | dltD | SCI_0235 | SCI_1889 | Glycerophosphodiester phosphdiesterase family protein. | Putative D-alanine transfer protein DltD. | 0.449 |
SCI_0776 | SCI_0777 | SCI_0776 | SCI_0777 | Component of a phospotransferase system. | Hypothetical protein. | 0.951 |
SCI_0776 | SCI_1105 | SCI_0776 | SCI_1105 | Component of a phospotransferase system. | Hypothetical protein. | 0.511 |
SCI_0776 | dltA | SCI_0776 | SCI_1892 | Component of a phospotransferase system. | Putative D-alanine-poly(phosphoribitol) ligase subunit 1; Catalyzes the first step in the D-alanylation of lipoteichoic acid (LTA), the activation of D-alanine and its transfer onto the D- alanyl carrier protein (Dcp) DltC. In an ATP-dependent two-step reaction, forms a high energy D-alanyl-AMP intermediate, followed by transfer of the D-alanyl residue as a thiol ester to the phosphopantheinyl prosthetic group of the Dcp. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall. Bel [...] | 0.564 |
SCI_0776 | dltB | SCI_0776 | SCI_1891 | Component of a phospotransferase system. | Putative membrane protein involved in D-alanine export; Could be involved in the transport of activated D-alanine through the membrane. | 0.540 |
SCI_0776 | dltC | SCI_0776 | SCI_1890 | Component of a phospotransferase system. | D-alanine--poly(phosphoribitol) ligase subunit 2; Carrier protein involved in the D-alanylation of lipoteichoic acid (LTA). The loading of thioester-linked D-alanine onto DltC is catalyzed by D-alanine--D-alanyl carrier protein ligase DltA. The DltC- carried D-alanyl group is further transferred to cell membrane phosphatidylglycerol (PG) by forming an ester bond, probably catalyzed by DltD. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall. | 0.595 |
SCI_0776 | dltD | SCI_0776 | SCI_1889 | Component of a phospotransferase system. | Putative D-alanine transfer protein DltD. | 0.656 |
SCI_0776 | endA | SCI_0776 | SCI_0673 | Component of a phospotransferase system. | Putative DNA-entry endonuclease. | 0.560 |
SCI_0777 | SCI_0235 | SCI_0777 | SCI_0235 | Hypothetical protein. | Glycerophosphodiester phosphdiesterase family protein. | 0.417 |
SCI_0777 | SCI_0776 | SCI_0777 | SCI_0776 | Hypothetical protein. | Component of a phospotransferase system. | 0.951 |
SCI_0777 | SCI_1105 | SCI_0777 | SCI_1105 | Hypothetical protein. | Hypothetical protein. | 0.685 |
SCI_0777 | SCI_1369 | SCI_0777 | SCI_1369 | Hypothetical protein. | Serine/threonine protein phosphatase. | 0.480 |
SCI_0777 | dltA | SCI_0777 | SCI_1892 | Hypothetical protein. | Putative D-alanine-poly(phosphoribitol) ligase subunit 1; Catalyzes the first step in the D-alanylation of lipoteichoic acid (LTA), the activation of D-alanine and its transfer onto the D- alanyl carrier protein (Dcp) DltC. In an ATP-dependent two-step reaction, forms a high energy D-alanyl-AMP intermediate, followed by transfer of the D-alanyl residue as a thiol ester to the phosphopantheinyl prosthetic group of the Dcp. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall. Bel [...] | 0.742 |
SCI_0777 | dltB | SCI_0777 | SCI_1891 | Hypothetical protein. | Putative membrane protein involved in D-alanine export; Could be involved in the transport of activated D-alanine through the membrane. | 0.744 |
SCI_0777 | dltC | SCI_0777 | SCI_1890 | Hypothetical protein. | D-alanine--poly(phosphoribitol) ligase subunit 2; Carrier protein involved in the D-alanylation of lipoteichoic acid (LTA). The loading of thioester-linked D-alanine onto DltC is catalyzed by D-alanine--D-alanyl carrier protein ligase DltA. The DltC- carried D-alanyl group is further transferred to cell membrane phosphatidylglycerol (PG) by forming an ester bond, probably catalyzed by DltD. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall. | 0.765 |
SCI_0777 | dltD | SCI_0777 | SCI_1889 | Hypothetical protein. | Putative D-alanine transfer protein DltD. | 0.781 |
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