Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SCI_0785 | phoL | SCI_0785 | SCI_0786 | Hypothetical protein; Belongs to the UPF0346 family. | PhoH-like protein. | 0.613 |
| SCI_0787 | SCI_0788 | SCI_0787 | SCI_0788 | Acetyltransferase. | Hypothetical protein. | 0.786 |
| SCI_0787 | phoL | SCI_0787 | SCI_0786 | Acetyltransferase. | PhoH-like protein. | 0.458 |
| SCI_0788 | SCI_0787 | SCI_0788 | SCI_0787 | Hypothetical protein. | Acetyltransferase. | 0.786 |
| SCI_0788 | phoL | SCI_0788 | SCI_0786 | Hypothetical protein. | PhoH-like protein. | 0.400 |
| cdd | era | SCI_1002 | SCI_0797 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.715 |
| cdd | phoL | SCI_1002 | SCI_0786 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | PhoH-like protein. | 0.468 |
| cdd | ybeY | SCI_1002 | SCI_0795 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.438 |
| cmk | phoL | SCI_1091 | SCI_0786 | Cytidylate kinase. | PhoH-like protein. | 0.438 |
| era | cdd | SCI_0797 | SCI_1002 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | 0.715 |
| era | phoL | SCI_0797 | SCI_0786 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | PhoH-like protein. | 0.587 |
| era | recO | SCI_0797 | SCI_0043 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.651 |
| era | ybeY | SCI_0797 | SCI_0795 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.884 |
| hflX | phoL | SCI_0703 | SCI_0786 | Putative GTP-binding protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | PhoH-like protein. | 0.484 |
| hflX | ybeY | SCI_0703 | SCI_0795 | Putative GTP-binding protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | Hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.440 |
| phoL | SCI_0785 | SCI_0786 | SCI_0785 | PhoH-like protein. | Hypothetical protein; Belongs to the UPF0346 family. | 0.613 |
| phoL | SCI_0787 | SCI_0786 | SCI_0787 | PhoH-like protein. | Acetyltransferase. | 0.458 |
| phoL | SCI_0788 | SCI_0786 | SCI_0788 | PhoH-like protein. | Hypothetical protein. | 0.400 |
| phoL | cdd | SCI_0786 | SCI_1002 | PhoH-like protein. | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | 0.468 |
| phoL | cmk | SCI_0786 | SCI_1091 | PhoH-like protein. | Cytidylate kinase. | 0.438 |
page 1 of 2