Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SCI_0793 | dgkA | SCI_0793 | SCI_0796 | ABC-type transport system, ATPase and permease component. | Diacylglycerol kinase. | 0.526 |
| SCI_0793 | era | SCI_0793 | SCI_0797 | ABC-type transport system, ATPase and permease component. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.411 |
| SCI_0793 | sodA | SCI_0793 | SCI_0577 | ABC-type transport system, ATPase and permease component. | Manganese-dependent superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.408 |
| SCI_0793 | ybeY | SCI_0793 | SCI_0795 | ABC-type transport system, ATPase and permease component. | Hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.703 |
| SCI_0830 | rplK | SCI_0830 | SCI_0567 | Putative AMP-dependent synthetase and ligase. | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.811 |
| SCI_0830 | rplQ | SCI_0830 | SCI_1780 | Putative AMP-dependent synthetase and ligase. | 50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family. | 0.827 |
| SCI_0830 | rplU | SCI_0830 | SCI_1067 | Putative AMP-dependent synthetase and ligase. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.827 |
| SCI_0830 | rpsQ | SCI_0830 | SCI_1796 | Putative AMP-dependent synthetase and ligase. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.838 |
| SCI_0830 | sodA | SCI_0830 | SCI_0577 | Putative AMP-dependent synthetase and ligase. | Manganese-dependent superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.799 |
| SCI_0830 | ybeY | SCI_0830 | SCI_0795 | Putative AMP-dependent synthetase and ligase. | Hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.768 |
| dgkA | SCI_0793 | SCI_0796 | SCI_0793 | Diacylglycerol kinase. | ABC-type transport system, ATPase and permease component. | 0.526 |
| dgkA | era | SCI_0796 | SCI_0797 | Diacylglycerol kinase. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.757 |
| dgkA | ybeY | SCI_0796 | SCI_0795 | Diacylglycerol kinase. | Hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.938 |
| era | SCI_0793 | SCI_0797 | SCI_0793 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | ABC-type transport system, ATPase and permease component. | 0.411 |
| era | dgkA | SCI_0797 | SCI_0796 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Diacylglycerol kinase. | 0.757 |
| era | phoL | SCI_0797 | SCI_0786 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | PhoH-like protein. | 0.587 |
| era | rpsQ | SCI_0797 | SCI_1796 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.433 |
| era | ybeY | SCI_0797 | SCI_0795 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.884 |
| phoL | era | SCI_0786 | SCI_0797 | PhoH-like protein. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.587 |
| phoL | ybeY | SCI_0786 | SCI_0795 | PhoH-like protein. | Hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.894 |
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