STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amiFOligopeptide transport ATP-binding protein AmiF; Belongs to the ABC transporter superfamily. (307 aa)    
Predicted Functional Partners:
amiD
Oligopeptide transport system permease protein AmiD.
 
 0.998
amiC
Oligopeptide transport system permease protein AmiC.
 
 
 0.998
amiE
Oligopeptide transport ATP-binding protein AmiE; Belongs to the ABC transporter superfamily.
 
 
0.997
aliA
Oligopeptide-binding protein AliA.
 
 
 0.988
amiA
Oligopeptide-binding protein AmiA.
 
 
 0.986
SCI_0287
Hypothetical protein.
  
 
 0.663
SCI_1307
Hypothetical protein.
  
 
 0.663
SCI_1525
ABC transporter permease protein.
 
 
 0.663
cbiQ
Putative cobalt transport protein CbiQ; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
  
 
 0.663
repB
Plasmid replication protein.
  
  
 0.533
Your Current Organism:
Streptococcus constellatus
NCBI taxonomy Id: 862969
Other names: S. constellatus subsp. pharyngis C1050, Streptococcus constellatus subsp. pharyngis C1050, Streptococcus constellatus subsp. pharyngis str. C1050, Streptococcus constellatus subsp. pharyngis strain C1050
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