Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SANR_0109Transcriptional regulator. (144 aa)    
Predicted Functional Partners:
SANR_0110
Hypothetical protein.
       0.812
SANR_1464
Putative ABC transporter.
  
  
 0.659
SANR_0107
Putative MATE family transporter.
  
  
 0.590
mntH
Putative metal ion transporter; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family.
 
   
 0.588
SANR_0108
HAD superfamily hydrolase.
       0.540
SANR_1019
Hypothetical protein.
   
  
 0.514
SANR_1664
GentR family transcriptional regulator.
   
  
 0.514
Your Current Organism:
Streptococcus anginosus
NCBI taxonomy Id: 862971
Other names: S. anginosus C238, Streptococcus anginosus C238, Streptococcus anginosus str. C238, Streptococcus anginosus strain C238
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