STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C0Z20_18375N-acyl homoserine lactonase family protein. (283 aa)    
Predicted Functional Partners:
C0Z20_18370
Cupin domain-containing protein.
       0.786
C0Z20_18365
MFS transporter.
       0.773
C0Z20_18380
Aminobenzoate oxygenase.
    
  0.710
C0Z20_18385
Branched-chain amino acid aminotransferase.
    
  0.684
C0Z20_18360
Glutathione S-transferase.
   
   0.680
C0Z20_24240
Sarcosine oxidase subunit alpha family protein; Belongs to the GcvT family.
  
 0.654
C0Z20_24490
FAD-binding protein.
  
 0.641
GCA_000373005_03939
annotation not available
       0.628
C0Z20_13390
Rhodanese-like domain-containing protein.
  
 0.626
ilvE
Branched-chain-amino-acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
       0.616
Your Current Organism:
Trinickia symbiotica
NCBI taxonomy Id: 863227
Other names: BCRC 80258, Burkholderia sp. JPY347, Burkholderia sp. NKMU-JPY345, Burkholderia sp. NKMU-JPY347, Burkholderia sp. NKMU-JPY366, Burkholderia sp. NKMU-JPY581, Burkholderia symbiotica, Burkholderia symbiotica Sheu et al. 2012, KCTC 23309, LMG 26032, LMG:26032, Paraburkholderia symbiotica, Paraburkholderia symbiotica (Sheu et al. 2012) Sawana et al. 2015, T. symbiotica, Trinickia symbiotica (Sheu et al. 2012) Estrada-de Los Santos et al. 2018, strain JPY-345
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