STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHR70509.1PFAM: OmpA family; Uncharacterized protein conserved in bacteria (DUF2077); TIGRFAM: type IV / VI secretion system protein, DotU family; type VI secretion system OmpA/MotB family protein. (452 aa)    
Predicted Functional Partners:
EHR70507.1
PFAM: Protein of unknown function (DUF877); Protein of unknown function (DUF770); TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; type VI secretion protein, VC_A0107 family.
 
  
 0.997
EHR70514.1
PFAM: Protein of unknown function (DUF877); TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family.
 
  
 0.994
EHR70513.1
PFAM: Protein of unknown function (DUF770); TIGRFAM: type VI secretion protein, VC_A0107 family.
 
  
 0.986
EHR70516.1
Protein of avirulence locus involved in temperature-dependent protein secretion; PFAM: ImpE protein.
 
  
 0.985
EHR69619.1
PFAM: MotA/TolQ/ExbB proton channel family; TIGRFAM: flagellar motor stator protein MotA.
  
 0.984
EHR70508.1
PFAM: Bacterial protein of unknown function (DUF876); TIGRFAM: type VI secretion protein, VC_A0114 family.
 
  
 0.984
EHR70518.1
PFAM: Bacterial protein of unknown function (DUF879); TIGRFAM: type VI secretion protein, VC_A0110 family.
 
  
 0.984
EHR70510.1
Type VI secretion protein IcmF; PFAM: Protein of unknown function (DUF1215); Intracellular multiplication and human macrophage-killing; TIGRFAM: type VI secretion protein IcmF.
 
 
 0.979
EHR70511.1
PFAM: Uncharacterized protein conserved in bacteria (DUF2094); TIGRFAM: type VI secretion-associated protein, BMA_A0400 family.
 
  
 0.979
EHR70517.1
PFAM: Gene 25-like lysozyme; TIGRFAM: type VI secretion system lysozyme-related protein.
 
  
 0.963
Your Current Organism:
Burkholderiales bacterium JOSHI001
NCBI taxonomy Id: 864051
Other names: B. bacterium JOSHI_001, Burkholderiales bacterium JOSHI_001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.