STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIM29848.1PFAM: Protein of unknown function (DUF2393); TIGRFAM: TIGR02588 family protein. (139 aa)    
Predicted Functional Partners:
EIM29847.1
PFAM: Putative integral membrane protein (DUF2391); TIGRFAM: putative integral membrane protein TIGR02587.
 
     0.952
EIM29845.1
Hypothetical protein.
       0.773
EIM29846.1
Hypothetical protein.
       0.773
EIM29844.1
CBS-domain-containing membrane protein; PFAM: Putative phospholipid-binding domain; CBS domain.
       0.722
EIM30866.1
Cupin domain-containing protein; PFAM: Cupin domain.
  
     0.660
EIM25973.1
Hypothetical protein.
  
     0.517
EIM24331.1
Transposase family protein; PFAM: Transposase DDE domain.
  
     0.485
EIM25230.1
PFAM: Transposase DDE domain; Transposase domain (DUF772).
  
     0.481
EIM28555.1
PFAM: Transposase DDE domain; Transposase domain (DUF772).
  
     0.465
EIM24334.1
PFAM: Transposase DDE domain; Transposase domain (DUF772).
  
     0.460
Your Current Organism:
Microvirga lotononidis
NCBI taxonomy Id: 864069
Other names: HAMBI 3237, LMG 26455, LMG:26455, M. lotononidis, Microvirga lotononidis Ardley et al. 2012, Microvirga sp. WSM3557, Rhizobiales bacterium WSM3557, strain WSM3557
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.