STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIM29886.1Transposase. (175 aa)    
Predicted Functional Partners:
EIM29885.1
Hypothetical protein.
 
     0.889
EIM31270.1
Hypothetical protein.
 
     0.773
EIM30636.1
Hypothetical protein.
 
     0.771
EIM30455.1
Hypothetical protein.
 
     0.771
EIM29859.1
Hypothetical protein.
 
     0.771
EIM28620.1
Hypothetical protein.
 
     0.771
EIM26819.1
Hypothetical protein.
 
     0.771
EIM30277.1
Hypothetical protein.
 
     0.769
EIM29884.1
Sugar phosphate permease; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily.
       0.505
EIM26643.1
PFAM: PemK-like protein.
  
     0.438
Your Current Organism:
Microvirga lotononidis
NCBI taxonomy Id: 864069
Other names: HAMBI 3237, LMG 26455, LMG:26455, M. lotononidis, Microvirga lotononidis Ardley et al. 2012, Microvirga sp. WSM3557, Rhizobiales bacterium WSM3557, strain WSM3557
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.