STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIM30083.1Multidrug resistance efflux pump; PFAM: HlyD family secretion protein; ABC-2 type transporter; overlaps another CDS with the same product name. (1102 aa)    
Predicted Functional Partners:
EIM30084.1
Multidrug resistance efflux pump; PFAM: HlyD family secretion protein; overlaps another CDS with the same product name.
 
  
0.852
EIM26246.1
ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter.
 
 
 0.790
EIM30085.1
PFAM: short chain dehydrogenase; TIGRFAM: 3-hydroxybutyrate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.752
adc
Acetoacetate decarboxylase; Catalyzes the conversion of acetoacetate to acetone and carbon dioxide; Belongs to the ADC family.
       0.752
nodI
ATP-binding ABC transporter family nodulation protein NodI; Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4- linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system.
 
 
 0.587
EIM31229.1
PFAM: ABC transporter; TIGRFAM: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system.
  
 
 0.531
EIM30424.1
ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter.
  
 
 0.531
EIM28689.1
ABC-type multidrug transport system, ATPase and permease component; PFAM: ABC transporter; ABC transporter transmembrane region.
  
 
 0.515
EIM27141.1
ABC-type sugar transport system, ATPase component; PFAM: ABC transporter.
  
 
 0.515
EIM24706.1
ABC-type sugar transport system, ATPase component; PFAM: ABC transporter.
  
 
 0.515
Your Current Organism:
Microvirga lotononidis
NCBI taxonomy Id: 864069
Other names: HAMBI 3237, LMG 26455, LMG:26455, M. lotononidis, Microvirga lotononidis Ardley et al. 2012, Microvirga sp. WSM3557, Rhizobiales bacterium WSM3557, strain WSM3557
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