STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIM29040.1PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (262 aa)    
Predicted Functional Partners:
EIM28372.1
PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
  
    0.757
EIM28971.1
PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
  
    0.743
EIM24686.1
PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
  
    0.734
EIM24822.1
PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
  
    0.710
EIM28101.1
PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
  
    0.699
EIM27000.1
Flavodoxin reductase family protein; PFAM: 2Fe-2S iron-sulfur cluster binding domain; Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain.
    
  0.676
EIM24877.1
phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: 2Fe-2S iron-sulfur cluster binding domain; Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain; TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit.
    
  0.676
EIM24798.1
PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
  
    0.666
EIM28650.1
PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
  
    0.657
EIM24775.1
PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
  
    0.656
Your Current Organism:
Microvirga lotononidis
NCBI taxonomy Id: 864069
Other names: HAMBI 3237, LMG 26455, LMG:26455, M. lotononidis, Microvirga lotononidis Ardley et al. 2012, Microvirga sp. WSM3557, Rhizobiales bacterium WSM3557, strain WSM3557
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