STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIM28720.1PFAM: Thioesterase superfamily. (182 aa)    
Predicted Functional Partners:
EIM28722.1
PFAM: Enoyl-CoA hydratase/isomerase family; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain.
 
 
 0.893
EIM24884.1
PFAM: Enoyl-CoA hydratase/isomerase family; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 
 0.824
EIM28953.1
Thioesterase of type I polyketide synthase or non-ribosomal peptide synthase like protein; PFAM: Thioesterase domain.
  
 0.813
EIM28313.1
PFAM: Acyl transferase domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase.
  
 0.790
EIM28721.1
Hypothetical protein; PFAM: DinB family.
       0.779
EIM28952.1
Amino acid adenylation enzyme/thioester reductase family protein; PFAM: Phosphopantetheine attachment site; AMP-binding enzyme; TIGRFAM: amino acid adenylation domain.
  
 0.753
EIM28719.1
2-hydroxychromene-2-carboxylate isomerase; PFAM: DSBA-like thioredoxin domain.
       0.648
EIM28718.1
PFAM: Asp/Glu/Hydantoin racemase; TIGRFAM: aspartate racemase.
       0.628
EIM28538.1
2-nitropropane dioxygenase-like enzyme; PFAM: 2-nitropropane dioxygenase.
   
  0.577
ubiA
4-hydroxybenzoate polyprenyl transferase, proteobacterial; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
  
  
 0.571
Your Current Organism:
Microvirga lotononidis
NCBI taxonomy Id: 864069
Other names: HAMBI 3237, LMG 26455, LMG:26455, M. lotononidis, Microvirga lotononidis Ardley et al. 2012, Microvirga sp. WSM3557, Rhizobiales bacterium WSM3557, strain WSM3557
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