STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIM28900.1DMT(drug/metabolite transporter) superfamily permease; PFAM: EamA-like transporter family. (307 aa)    
Predicted Functional Partners:
EIM24646.1
PFAM: EamA-like transporter family.
  
     0.771
EIM27180.1
DMT(drug/metabolite transporter) superfamily permease; PFAM: EamA-like transporter family.
  
     0.770
EIM28901.1
Hypothetical protein.
       0.553
EIM28896.1
PFAM: Cyclopropane-fatty-acyl-phospholipid synthase.
       0.506
EIM28897.1
Flavin-dependent dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase.
       0.506
EIM28898.1
Methyltransferase family protein; PFAM: Methyltransferase domain.
       0.506
EIM28899.1
Putative naringenin-chalcone synthase; PFAM: Chalcone and stilbene synthases, N-terminal domain; Chalcone and stilbene synthases, C-terminal domain.
       0.506
Your Current Organism:
Microvirga lotononidis
NCBI taxonomy Id: 864069
Other names: HAMBI 3237, LMG 26455, LMG:26455, M. lotononidis, Microvirga lotononidis Ardley et al. 2012, Microvirga sp. WSM3557, Rhizobiales bacterium WSM3557, strain WSM3557
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