STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIM26992.1Choline dehydrogenase-like flavoprotein; PFAM: GMC oxidoreductase. (587 aa)    
Predicted Functional Partners:
EIM26991.1
Hypothetical protein.
 
 0.985
EIM27292.1
WD40 repeat-containing protein; PFAM: WD domain, G-beta repeat.
    
 0.937
EIM28203.1
Cytochrome c, mono- and diheme variants family; PFAM: Cytochrome c.
 
 
 0.871
EIM26327.1
Cytochrome c, mono- and diheme variants family; PFAM: Cytochrome c.
 
 
 0.840
EIM26990.1
PFAM: Cytochrome c; PRC-barrel domain.
  
    0.740
EIM26718.1
Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily.
  
  
  0.609
EIM30081.1
Hypothetical protein.
 
 
   0.579
EIM27145.1
PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I.
   
 
  0.575
EIM29208.1
Sugar kinase, ribokinase; PFAM: pfkB family carbohydrate kinase.
     
 0.552
mdh
Malate dehydrogenase, NAD-dependent; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
    
 0.548
Your Current Organism:
Microvirga lotononidis
NCBI taxonomy Id: 864069
Other names: HAMBI 3237, LMG 26455, LMG:26455, M. lotononidis, Microvirga lotononidis Ardley et al. 2012, Microvirga sp. WSM3557, Rhizobiales bacterium WSM3557, strain WSM3557
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.