STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIM25860.1PFAM: Protein of unknown function (DUF3309). (52 aa)    
Predicted Functional Partners:
EIM25861.1
PAS domain S-box; PFAM: HWE histidine kinase; PAS fold; TIGRFAM: PAS domain S-box.
       0.496
EIM25858.1
PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
       0.474
EIM25859.1
Hypothetical protein.
       0.474
EIM25246.1
PFAM: PRC-barrel domain.
 
     0.439
EIM26886.1
PFAM: PRC-barrel domain.
 
     0.436
EIM30875.1
PFAM: PRC-barrel domain.
 
     0.433
EIM30165.1
PFAM: PRC-barrel domain.
 
     0.433
EIM27538.1
PFAM: PRC-barrel domain.
 
     0.432
Your Current Organism:
Microvirga lotononidis
NCBI taxonomy Id: 864069
Other names: HAMBI 3237, LMG 26455, LMG:26455, M. lotononidis, Microvirga lotononidis Ardley et al. 2012, Microvirga sp. WSM3557, Rhizobiales bacterium WSM3557, strain WSM3557
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.