STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIM26000.1Short-chain dehydrogenase of unknown substrate specificity; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (254 aa)    
Predicted Functional Partners:
EIM26001.1
DNA-binding domain-containing protein, AraC-type; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; Protein of unknown function (DUF861).
 
     0.889
EIM28953.1
Thioesterase of type I polyketide synthase or non-ribosomal peptide synthase like protein; PFAM: Thioesterase domain.
  
 
 0.810
EIM28952.1
Amino acid adenylation enzyme/thioester reductase family protein; PFAM: Phosphopantetheine attachment site; AMP-binding enzyme; TIGRFAM: amino acid adenylation domain.
    
 0.765
EIM26576.1
DNA-binding domain-containing protein, AraC-type; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family.
 
     0.753
EIM24883.1
Phenylacetic acid degradation protein paaN; PFAM: MaoC like domain; Aldehyde dehydrogenase family; TIGRFAM: phenylacetic acid degradation protein paaN.
    
 0.709
EIM27321.1
PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II.
    
  0.674
EIM28899.1
Putative naringenin-chalcone synthase; PFAM: Chalcone and stilbene synthases, N-terminal domain; Chalcone and stilbene synthases, C-terminal domain.
    
 0.570
EIM26369.1
Dehydrogenase of unknown specificity; PFAM: short chain dehydrogenase.
  
 
  0.565
EIM29915.1
Dehydrogenase of unknown specificity; PFAM: short chain dehydrogenase.
  
 
  0.513
EIM25609.1
Dehydrogenase of unknown specificity; PFAM: short chain dehydrogenase.
  
 
  0.503
Your Current Organism:
Microvirga lotononidis
NCBI taxonomy Id: 864069
Other names: HAMBI 3237, LMG 26455, LMG:26455, M. lotononidis, Microvirga lotononidis Ardley et al. 2012, Microvirga sp. WSM3557, Rhizobiales bacterium WSM3557, strain WSM3557
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