STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGK95276.1Phage shock protein A (IM30), suppresses sigma54-dependent transcription; PFAM: PspA/IM30 family. (229 aa)    
Predicted Functional Partners:
AGK98230.1
Hypothetical protein.
  
 
 0.947
AGK95275.1
Hypothetical protein.
       0.824
AGK99005.1
PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; GAF domain; His Kinase A (phosphoacceptor) domain.
  
 
 0.818
AGK95751.1
Transcriptional antiterminator; PFAM: PTS system fructose IIA component; Sigma-54 interaction domain; PRD domain; Sigma-54, DNA binding domain; Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2.
   
 
 0.726
AGK98662.1
Transcriptional antiterminator; PFAM: PTS system fructose IIA component; Sigma-54 interaction domain; PRD domain.
   
 
 0.719
AGK98669.1
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain; PFAM: PTS system fructose IIA component; Sigma-54 interaction domain; PRD domain.
   
 
 0.719
AGK96115.1
Hypothetical protein; PFAM: SPFH domain / Band 7 family.
  
  
 0.645
AGK99391.1
Hypothetical protein.
  
  
 0.552
AGK96298.1
PFAM: Histidine kinase.
  
    0.536
AGK98080.1
PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
    0.536
Your Current Organism:
Clostridium pasteurianum
NCBI taxonomy Id: 86416
Other names: C. pasteurianum BC1, Clostridia isolate BC1, Clostridium pasteurianum BC1, Clostridium pasteurianum str. BC1, Clostridium pasteurianum strain BC1, Clostridium sp. ATCC 53464, Clostridium sp. BC1
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