STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGK96227.1PFAM: Spore germination protein; TIGRFAM: spore germination protein (amino acid permease). (368 aa)    
Predicted Functional Partners:
AGK96229.1
Germination protein, Ger(X)C family; PFAM: Spore germination B3/ GerAC like, C-terminal; TIGRFAM: germination protein, Ger(x)C family.
 
  
 0.934
AGK96228.1
PFAM: Bacillus/Clostridium GerA spore germination protein.
 
  
 0.795
AGK96447.1
Putative transcription factor, MBF1 like protein; PFAM: Helix-turn-helix.
  
     0.663
AGK95199.1
PFAM: Coat F domain.
  
     0.648
AGK99149.1
Hypothetical protein.
  
     0.617
AGK97142.1
Hypothetical protein.
  
     0.562
AGK97141.1
PFAM: EamA-like transporter family.
  
     0.549
AGK97122.1
PFAM: Type III restriction enzyme, res subunit.
  
     0.543
AGK97233.1
Hypothetical protein.
  
     0.531
AGK97124.1
Hypothetical protein.
  
     0.515
Your Current Organism:
Clostridium pasteurianum
NCBI taxonomy Id: 86416
Other names: C. pasteurianum BC1, Clostridia isolate BC1, Clostridium pasteurianum BC1, Clostridium pasteurianum str. BC1, Clostridium pasteurianum strain BC1, Clostridium sp. ATCC 53464, Clostridium sp. BC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.