STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGK96302.1ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter. (311 aa)    
Predicted Functional Partners:
AGK96304.1
ABC-type multidrug transport system, permease component; PFAM: ABC-2 type transporter.
 
  
 0.969
AGK96303.1
ABC-type multidrug transport system, permease component; PFAM: ABC-2 type transporter.
 
  
 0.961
AGK95292.1
ABC-type multidrug transport system, permease component; PFAM: ABC-2 type transporter; TIGRFAM: ABC transporter efflux protein, DrrB family.
  
 0.926
AGK96353.1
Hypothetical protein.
 
 
 0.705
AGK98092.1
PFAM: ABC-2 type transporter.
 
    0.702
AGK99390.1
ABC-type polysaccharide/polyol phosphate export systems, permease component; PFAM: ABC-2 type transporter.
 
  
 0.697
AGK98559.1
Putative membrane protein; PFAM: ABC-2 type transporter.
 
  
 0.648
AGK96301.1
Hypothetical protein.
       0.610
AGK98093.1
ABC-type multidrug transport system, permease component; PFAM: ABC-2 type transporter.
 
  
 0.610
AGK96292.1
acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; PFAM: AMP-binding enzyme.
  
  
 0.542
Your Current Organism:
Clostridium pasteurianum
NCBI taxonomy Id: 86416
Other names: C. pasteurianum BC1, Clostridia isolate BC1, Clostridium pasteurianum BC1, Clostridium pasteurianum str. BC1, Clostridium pasteurianum strain BC1, Clostridium sp. ATCC 53464, Clostridium sp. BC1
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