STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGK96492.1Putative membrane protein; PFAM: GtrA-like protein. (152 aa)    
Predicted Functional Partners:
AGK96729.1
Putative integral membrane protein.
 
     0.677
AGK97863.1
PFAM: Glycosyl transferase family 2.
 
  
 0.634
AGK96493.1
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase.
 
  
 0.528
AGK98949.1
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase.
 
  
 0.523
AGK96711.1
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase.
 
  
 0.497
AGK96730.1
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase.
 
  
 0.488
AGK97141.1
PFAM: EamA-like transporter family.
 
    0.459
AGK95365.1
PFAM: Phosphotransferase enzyme family; TIGRFAM: spore coat protein, CotS family.
   
    0.426
AGK97916.1
PFAM: YtxC-like family; TIGRFAM: putative sporulation protein YtxC.
  
    0.423
Your Current Organism:
Clostridium pasteurianum
NCBI taxonomy Id: 86416
Other names: C. pasteurianum BC1, Clostridia isolate BC1, Clostridium pasteurianum BC1, Clostridium pasteurianum str. BC1, Clostridium pasteurianum strain BC1, Clostridium sp. ATCC 53464, Clostridium sp. BC1
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