Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AGK96800.1Hypothetical protein. (103 aa)    
Predicted Functional Partners:
AGK96799.1
PFAM: Phage QLRG family, putative DNA packaging.
       0.773
AGK96801.1
PFAM: Bacteriophage protein of unknown function (DUF646).
       0.773
AGK96802.1
Hypothetical protein.
       0.773
AGK96798.1
Hypothetical protein.
       0.757
AGK96803.1
PFAM: Phage major tail protein; TIGRFAM: phage major tail protein, phi13 family.
       0.634
AGK96796.1
PFAM: Caudovirus prohead protease.
       0.591
AGK96797.1
PFAM: Phage capsid family; TIGRFAM: phage major capsid protein, HK97 family.
       0.591
AGK96795.1
PFAM: Phage portal protein; Phage Mu protein F like protein; TIGRFAM: phage portal protein, HK97 family.
       0.455
AGK96804.1
Hypothetical protein.
       0.455
Your Current Organism:
Clostridium pasteurianum
NCBI taxonomy Id: 86416
Other names: C. pasteurianum BC1, Clostridia isolate BC1, Clostridium pasteurianum BC1, Clostridium pasteurianum str. BC1, Clostridium pasteurianum strain BC1, Clostridium sp. ATCC 53464, Clostridium sp. BC1
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