STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGK96808.1PFAM: Transglycosylase SLT domain. (856 aa)    
Predicted Functional Partners:
AGK96809.1
PFAM: Phage tail protein.
  
   0.880
AGK96810.1
Hypothetical protein.
       0.732
AGK98161.1
PFAM: Phage tail protein; TIGRFAM: putative phage tail component, N-terminal domain.
 
   0.709
AGK98158.1
PFAM: Protein of unknown function (DUF1142); TIGRFAM: phage minor structural protein, N-terminal region.
 
     0.701
AGK96811.1
Hypothetical protein.
 
     0.691
AGK95417.1
PFAM: Protein of unknown function (DUF1142); TIGRFAM: phage minor structural protein, N-terminal region.
 
     0.678
AGK95412.1
PFAM: Phage tail protein.
 
   0.673
AGK97623.1
Hypothetical protein.
 
     0.654
AGK97419.1
TIGRFAM: phage minor structural protein, N-terminal region; manually curated; non-canonical start codon.
 
     0.653
AGK97396.1
PFAM: Phage terminase small subunit; Terminase small subunit.
 
  
 0.646
Your Current Organism:
Clostridium pasteurianum
NCBI taxonomy Id: 86416
Other names: C. pasteurianum BC1, Clostridia isolate BC1, Clostridium pasteurianum BC1, Clostridium pasteurianum str. BC1, Clostridium pasteurianum strain BC1, Clostridium sp. ATCC 53464, Clostridium sp. BC1
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