Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGK96808.1PFAM: Transglycosylase SLT domain. (856 aa)    
Predicted Functional Partners:
AGK96809.1
PFAM: Phage tail protein.
  
    0.807
AGK96810.1
Hypothetical protein.
       0.732
AGK98158.1
PFAM: Protein of unknown function (DUF1142); TIGRFAM: phage minor structural protein, N-terminal region.
 
     0.709
AGK95417.1
PFAM: Protein of unknown function (DUF1142); TIGRFAM: phage minor structural protein, N-terminal region.
 
     0.688
AGK96811.1
Hypothetical protein.
 
     0.670
AGK96795.1
PFAM: Phage portal protein; Phage Mu protein F like protein; TIGRFAM: phage portal protein, HK97 family.
 
   
 0.665
AGK97419.1
TIGRFAM: phage minor structural protein, N-terminal region; manually curated; non-canonical start codon.
 
     0.663
AGK97623.1
Hypothetical protein.
 
     0.654
AGK95399.1
Phage terminase-like protein, large subunit; PFAM: Phage Terminase.
 
   
 0.642
AGK98021.1
PFAM: Holin family; TIGRFAM: toxin secretion/phage lysis holin.
 
    0.626
Your Current Organism:
Clostridium pasteurianum
NCBI taxonomy Id: 86416
Other names: C. pasteurianum BC1, Clostridia isolate BC1, Clostridium pasteurianum BC1, Clostridium pasteurianum str. BC1, Clostridium pasteurianum strain BC1, Clostridium sp. ATCC 53464, Clostridium sp. BC1
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