Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGK96820.1Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; PFAM: DJ-1/PfpI family. (198 aa)    
Predicted Functional Partners:
AGK95231.1
Osmoprotectant transport system substrate-binding protein; PFAM: Substrate binding domain of ABC-type glycine betaine transport system.
   
    0.542
AGK98642.1
DNA-binding domain-containing protein, AraC-type; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain.
 
 
 0.531
AGK98689.1
DNA-binding domain-containing protein, AraC-type; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain.
 
 
 0.526
AGK99403.1
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain; PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family.
 
 
 0.513
AGK96601.1
Putative transcriptional regulator; PFAM: Helix-turn-helix.
   
 
 0.476
AGK96821.1
Hypothetical protein.
       0.439
AGK96822.1
Putative transcriptional regulator; PFAM: Helix-turn-helix.
       0.423
AGK95189.1
PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
    
 
 0.420
sigA
RNA polymerase sigma factor, sigma-70 family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.420
AGK95599.1
SOS response transcriptional repressor, RecA-mediated autopeptidase; PFAM: Helix-turn-helix; Peptidase S24-like.
   
   0.411
Your Current Organism:
Clostridium pasteurianum
NCBI taxonomy Id: 86416
Other names: C. pasteurianum BC1, Clostridia isolate BC1, Clostridium pasteurianum BC1, Clostridium pasteurianum str. BC1, Clostridium pasteurianum strain BC1, Clostridium sp. ATCC 53464, Clostridium sp. BC1
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