STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGK97017.1PFAM: ArsC family; TIGRFAM: nitrogenase-associated protein; Belongs to the ArsC family. (139 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.637
AGK98533.1
Putative dithiol-disulfide isomerase involved in polyketide biosynthesis; PFAM: DSBA-like thioredoxin domain.
   
 
 0.633
AGK98908.1
Hypothetical protein; PFAM: Dinitrogenase iron-molybdenum cofactor.
 
   
 0.630
AGK98263.1
Nitrogenase vanadium-iron protein, alpha chain; PFAM: Nitrogenase component 1 type Oxidoreductase; TIGRFAM: nitrogenase vanadium-iron protein, alpha chain; nitrogenase component I, alpha chain; nitrogenase alpha chain; Belongs to the NifD/NifK/NifE/NifN family.
  
   
 0.614
AGK98261.1
Nitrogenase molybdenum-iron protein, alpha and beta chains; PFAM: Nitrogenase component 1 type Oxidoreductase; TIGRFAM: V-containing nitrogenase, beta subunit; Belongs to the NifD/NifK/NifE/NifN family.
  
   
 0.574
msrB
PFAM: SelR domain; TIGRFAM: methionine-R-sulfoxide reductase.
     
 0.561
AGK98920.1
Putative Fe-S oxidoreductase; PFAM: Radical SAM superfamily; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB.
 
   
 0.496
AGK96919.1
Hypothetical protein.
  
     0.462
AGK97016.1
PFAM: Domain of unknown function DUF20; TIGRFAM: sporulation integral membrane protein YtvI; manually curated; non-canonical start codon.
       0.443
AGK97722.1
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily.
  
  
 0.433
Your Current Organism:
Clostridium pasteurianum
NCBI taxonomy Id: 86416
Other names: C. pasteurianum BC1, Clostridia isolate BC1, Clostridium pasteurianum BC1, Clostridium pasteurianum str. BC1, Clostridium pasteurianum strain BC1, Clostridium sp. ATCC 53464, Clostridium sp. BC1
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