STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGK97017.1PFAM: ArsC family; TIGRFAM: nitrogenase-associated protein; Belongs to the ArsC family. (139 aa)    
Predicted Functional Partners:
AGK98533.1
Putative dithiol-disulfide isomerase involved in polyketide biosynthesis; PFAM: DSBA-like thioredoxin domain.
  
 
 0.722
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.681
rpoC
DNA-directed RNA polymerase, beta'' subunit, predominant form; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.665
AGK98908.1
Hypothetical protein; PFAM: Dinitrogenase iron-molybdenum cofactor.
 
   
 0.636
AGK98263.1
Nitrogenase vanadium-iron protein, alpha chain; PFAM: Nitrogenase component 1 type Oxidoreductase; TIGRFAM: nitrogenase vanadium-iron protein, alpha chain; nitrogenase component I, alpha chain; nitrogenase alpha chain; Belongs to the NifD/NifK/NifE/NifN family.
  
     0.611
AGK98261.1
Nitrogenase molybdenum-iron protein, alpha and beta chains; PFAM: Nitrogenase component 1 type Oxidoreductase; TIGRFAM: V-containing nitrogenase, beta subunit; Belongs to the NifD/NifK/NifE/NifN family.
  
     0.570
AGK95189.1
PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
    
   0.561
sigA
RNA polymerase sigma factor, sigma-70 family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
   0.561
msrB
PFAM: SelR domain; TIGRFAM: methionine-R-sulfoxide reductase.
     
 0.503
AGK98920.1
Putative Fe-S oxidoreductase; PFAM: Radical SAM superfamily; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB.
 
   
 0.499
Your Current Organism:
Clostridium pasteurianum
NCBI taxonomy Id: 86416
Other names: C. pasteurianum BC1, Clostridia isolate BC1, Clostridium pasteurianum BC1, Clostridium pasteurianum str. BC1, Clostridium pasteurianum strain BC1, Clostridium sp. ATCC 53464, Clostridium sp. BC1
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