STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGK97691.1Type II secretory pathway, component PulF; PFAM: Bacterial type II secretion system protein F domain. (257 aa)    
Predicted Functional Partners:
AGK97711.1
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; PFAM: Type II/IV secretion system protein; GSPII_E N-terminal domain.
 
 
 0.951
AGK98211.1
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; PFAM: GSPII_E N-terminal domain; Type II/IV secretion system protein; TIGRFAM: general secretory pathway protein E.
 
 
 0.951
AGK98149.1
Prepilin signal peptidase PulO-like peptidase; PFAM: Bacterial Peptidase A24 N-terminal domain; Type IV leader peptidase family.
 
  
 0.882
AGK98208.1
PFAM: Competence protein A; Cell division protein FtsA; TIGRFAM: type IV pilus assembly protein PilM.
 
 
 
 0.856
AGK97282.1
PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT.
 
  
 0.854
AGK97690.1
PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
 
  
 0.826
AGK97710.1
Type II secretory pathway, component PulF; PFAM: Bacterial type II secretion system protein F domain.
  
     0.773
AGK98209.1
PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
 
  
 0.759
AGK97688.1
TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
  
  
 0.758
AGK98150.1
Hypothetical protein.
  
  
 0.741
Your Current Organism:
Clostridium pasteurianum
NCBI taxonomy Id: 86416
Other names: C. pasteurianum BC1, Clostridia isolate BC1, Clostridium pasteurianum BC1, Clostridium pasteurianum str. BC1, Clostridium pasteurianum strain BC1, Clostridium sp. ATCC 53464, Clostridium sp. BC1
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