STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGK97832.1PFAM: Predicted membrane protein (DUF2127). (176 aa)    
Predicted Functional Partners:
AGK96521.1
Uncharacterized membrane-anchored protein; PFAM: Repeat of Unknown Function (DUF347).
  
     0.625
AGK96482.1
Hypothetical protein.
  
     0.578
AGK95790.1
PFAM: Peptidase A4 family.
  
     0.576
AGK96253.1
PFAM: FMN-binding domain.
  
     0.541
AGK95680.1
Hypothetical protein.
  
     0.505
AGK97864.1
Hypothetical protein.
  
     0.482
AGK98927.1
PFAM: Bacterial Ig-like domain (group 3).
  
     0.462
AGK95157.1
Putative membrane protein.
  
     0.435
Your Current Organism:
Clostridium pasteurianum
NCBI taxonomy Id: 86416
Other names: C. pasteurianum BC1, Clostridia isolate BC1, Clostridium pasteurianum BC1, Clostridium pasteurianum str. BC1, Clostridium pasteurianum strain BC1, Clostridium sp. ATCC 53464, Clostridium sp. BC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.