STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGK98020.1Lysozyme M1 (1,4-beta-N-acetylmuramidase); PFAM: Glycosyl hydrolases family 25; Putative peptidoglycan binding domain. (313 aa)    
Predicted Functional Partners:
AGK98021.1
PFAM: Holin family; TIGRFAM: toxin secretion/phage lysis holin.
       0.790
AGK98022.1
Hypothetical protein.
       0.588
AGK99459.1
Putative low-complexity protein; PFAM: Pentapeptide repeats (8 copies).
 
 
 
 0.579
AGK95892.1
PFAM: Heparinase II/III-like protein.
 
  
 0.492
ispH
(E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
  
  
 0.488
AGK98019.1
Hypothetical protein.
       0.449
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
  
    0.443
AGK95269.1
Hypothetical protein; PFAM: NlpC/P60 family.
  
  
 0.431
AGK95270.1
Hypothetical protein; PFAM: NlpC/P60 family.
  
  
 0.431
AGK96908.1
Cell wall-associated hydrolase, invasion-associated protein; PFAM: NlpC/P60 family.
  
  
 0.431
Your Current Organism:
Clostridium pasteurianum
NCBI taxonomy Id: 86416
Other names: C. pasteurianum BC1, Clostridia isolate BC1, Clostridium pasteurianum BC1, Clostridium pasteurianum str. BC1, Clostridium pasteurianum strain BC1, Clostridium sp. ATCC 53464, Clostridium sp. BC1
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