Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGK98384.1PFAM: Bacterial regulatory proteins, lacI family; family. (350 aa)    
Predicted Functional Partners:
AGK98650.1
PFAM: Bacterial regulatory proteins, lacI family; family.
  
     0.774
AGK98596.1
PFAM: Bacterial regulatory proteins, lacI family; Bacterial extracellular solute-binding protein; family.
 
   
 0.756
AGK97263.1
PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II.
    
 
 0.747
AGK96292.1
acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; PFAM: AMP-binding enzyme.
    
 
 0.677
AGK97467.1
PFAM: PTS HPr component phosphorylation site; TIGRFAM: Phosphotransferase System HPr (HPr) Family.
   
 
 0.660
AGK99006.1
ABC-type sugar transport system, periplasmic component; PFAM: family.
 
  
 0.603
AGK99319.1
PFAM: Bacterial regulatory proteins, gntR family; UTRA domain.
  
   
 0.496
AGK98383.1
ATPase component of ABC-type sugar transporter; PFAM: ABC transporter; Belongs to the ABC transporter superfamily.
  
  
 0.494
AGK99175.1
PAS domain S-box; PFAM: Sigma-54 interaction domain; PTS HPr component phosphorylation site; PAS fold; TIGRFAM: PAS domain S-box.
   
 
 0.493
AGK99005.1
PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; GAF domain; His Kinase A (phosphoacceptor) domain.
   
 
 0.465
Your Current Organism:
Clostridium pasteurianum
NCBI taxonomy Id: 86416
Other names: C. pasteurianum BC1, Clostridia isolate BC1, Clostridium pasteurianum BC1, Clostridium pasteurianum str. BC1, Clostridium pasteurianum strain BC1, Clostridium sp. ATCC 53464, Clostridium sp. BC1
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