STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGK99323.1ABC-type spermidine/putrescine transport system, permease component I; PFAM: Binding-protein-dependent transport system inner membrane component. (279 aa)    
Predicted Functional Partners:
AGK99326.1
ABC-type spermidine/putrescine transport system, permease component II; PFAM: Binding-protein-dependent transport system inner membrane component.
 
 
 0.997
AGK99325.1
ABC-type spermidine/putrescine transport system, ATPase component; PFAM: ABC transporter; Belongs to the ABC transporter superfamily.
 
 0.994
AGK97238.1
Spermidine/putrescine-binding periplasmic protein; PFAM: Bacterial extracellular solute-binding protein.
 
  
 0.942
potA
Spermidine/putrescine ABC transporter ATP-binding subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
 
 0.909
AGK99324.1
ABC-type uncharacterized transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein.
 
     0.902
AGK98593.1
ABC-type spermidine/putrescine transport system, ATPase component; PFAM: ABC transporter.
 
 
 0.896
AGK96281.1
ABC-type spermidine/putrescine transport system, ATPase component; PFAM: ABC transporter; TOBE domain; manually curated.
 
 
 0.883
AGK95156.1
ABC-type spermidine/putrescine transport system, ATPase component; PFAM: ABC transporter.
 
 
 0.867
AGK97237.1
ABC-type spermidine/putrescine transport system, permease component II; PFAM: Binding-protein-dependent transport system inner membrane component.
 
  
0.792
AGK99321.1
Putative metal-dependent phosphoesterase, PHP family; PFAM: PHP domain.
 
     0.660
Your Current Organism:
Clostridium pasteurianum
NCBI taxonomy Id: 86416
Other names: C. pasteurianum BC1, Clostridia isolate BC1, Clostridium pasteurianum BC1, Clostridium pasteurianum str. BC1, Clostridium pasteurianum strain BC1, Clostridium sp. ATCC 53464, Clostridium sp. BC1
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