STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGK99475.1Multidrug resistance efflux pump; PFAM: HlyD family secretion protein. (281 aa)    
Predicted Functional Partners:
AGK99477.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
 
     0.854
AGK99476.1
ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter.
 
 
 0.848
AGK99005.1
PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; GAF domain; His Kinase A (phosphoacceptor) domain.
 
  
 0.649
AGK96028.1
Hypothetical protein.
 
  
 0.574
AGK99137.1
ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease.
 
  
 0.559
AGK95358.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
 
  
 0.558
AGK99501.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
 
  
 0.556
hisI
phosphoribosyl-AMP cyclohydrolase; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.
  
    0.521
AGK99379.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
  
  
 0.494
AGK95987.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
  
  
 0.467
Your Current Organism:
Clostridium pasteurianum
NCBI taxonomy Id: 86416
Other names: C. pasteurianum BC1, Clostridia isolate BC1, Clostridium pasteurianum BC1, Clostridium pasteurianum str. BC1, Clostridium pasteurianum strain BC1, Clostridium sp. ATCC 53464, Clostridium sp. BC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.