Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGK99520.1Hypothetical protein. (253 aa)    
Predicted Functional Partners:
AGK99518.1
Hypothetical protein; PFAM: Predicted metallopeptidase (DUF2201).
 
     0.947
AGK99519.1
PFAM: ATPase family associated with various cellular activities (AAA).
 
     0.947
AGK97152.1
PFAM: ATPase family associated with various cellular activities (AAA).
 
     0.790
AGK97153.1
Hypothetical protein; PFAM: Predicted metallopeptidase (DUF2201).
 
     0.790
AGK97477.1
2'-5' RNA ligase.
  
     0.735
AGK96384.1
Holliday junction resolvase; PFAM: Endodeoxyribonuclease RusA.
  
     0.646
AGK98237.1
Hypothetical protein.
  
     0.607
AGK96579.1
Hypothetical protein.
  
     0.588
AGK97770.1
PFAM: Flagellar hook-length control protein FliK.
  
     0.573
AGK99008.1
PFAM: Nitroreductase family.
  
   
 0.510
Your Current Organism:
Clostridium pasteurianum
NCBI taxonomy Id: 86416
Other names: C. pasteurianum BC1, Clostridia isolate BC1, Clostridium pasteurianum BC1, Clostridium pasteurianum str. BC1, Clostridium pasteurianum strain BC1, Clostridium sp. ATCC 53464, Clostridium sp. BC1
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