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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFM38563.1Hypothetical protein; Pfam: PF07613; InterPro: IPR011470. (430 aa)    
Predicted Functional Partners:
EFM38562.1
Hypothetical protein.
 
     0.950
EFM38561.1
IclR helix-turn-helix domain protein; COG: COG1414; Pfam: PF09339,PF01614; InterPro: IPR005471.
       0.742
EFM38564.1
Basic membrane protein; COG: COG1744; Pfam: PF02608; InterPro: IPR003760.
       0.580
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
       0.579
glnS
glutamine--tRNA ligase; COG: COG0008; Pfam: PF00749,PF03950; InterPro: IPR004514.
       0.497
EFM38568.1
Radical SAM domain protein; COG: COG1032; Pfam: PF04055; InterPro: IPR006638.
 
     0.410
radC
DNA repair protein RadC; COG: COG2003; Pfam: PF04002; InterPro: IPR001405; Belongs to the UPF0758 family.
       0.405
maf
Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
       0.400
Your Current Organism:
Eubacterium yurii
NCBI taxonomy Id: 864565
Other names: Eubacterium yurii subsp. margaretiae ATCC 43715, Eubacterium yurii subsp. margaretiae str. ATCC 43715, Eubacterium yurii subsp. margaretiae strain ATCC 43715, [. yurii subsp. margaretiae ATCC 43715, [Eubacterium] yurii subsp. margaretiae ATCC 43715
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