STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ04173.1PFAM: Phage integrase family; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: mtt:Ftrac_1959 integrase family protein; PFAM: Integrase, catalytic core, phage; SPTR: Integrase family protein; manually curated; overlaps another CDS with the same product name; Belongs to the 'phage' integrase family. (293 aa)    
Predicted Functional Partners:
EHQ04172.1
Transposase; PFAM: Putative transposase; InterPro IPR007069; KEGG: mtt:Ftrac_1958 transposase; PFAM: Transposase, IS801/IS1294; SPTR: Transposase.
     0.942
EHQ01561.1
Transposase; PFAM: Putative transposase; InterPro IPR007069; KEGG: mtt:Ftrac_1958 transposase; PFAM: Transposase, IS801/IS1294; SPTR: Transposase.
     0.754
EHQ02036.1
Transposase; PFAM: Putative transposase; InterPro IPR007069; KEGG: mtt:Ftrac_1958 transposase; PFAM: Transposase, IS801/IS1294; SPTR: Transposase.
     0.754
EHQ01101.1
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.515
EHQ03844.1
Cell division FtsK/SpoIIIE; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family; COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein; InterPro IPR002543:IPR018541; KEGG: gfo:GFO_2183 DNA translocase; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SPTR: DNA translocase.
  
   
 0.487
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.