STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ04218.1Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; PFAM: FabA-like domain; COGs: COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase; InterPro IPR013114; KEGG: gfo:GFO_1608 (3R)-hydroxymyristoyl-[acyl-carrier-protein]dehydratase; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; SPTR:(3R)-hydroxymyristoyl-[acyl-carrier-protein]de hydratase. (151 aa)    
Predicted Functional Partners:
EHQ04219.1
Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: gfo:GFO_1609 enoyl-[acyl-carrier-protein] reductase [NADH] 2; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Enoyl-[acyl-carrier-protein] reductase [NADH] 2.
 
  0.992
EHQ04216.1
Acyl-carrier protein; PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein; KEGG: gfo:GFO_1606 acyl-carrier protein; SPTR: Acyl-carrier protein.
 
 0.980
EHQ04217.1
PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; InterPro IPR014030:IPR014031; KEGG: gfo:GFO_1607 3-oxoacyl-[acyl-carrier-protein] synthase; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; SPTR: 3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 0.973
EHQ03905.1
KEGG: gfo:GFO_1665 FabZ-like protein; SPTR: FabZ-like protein.
   
  0.935
EHQ04220.1
PFAM: Chalcone and stilbene synthases, N-terminal domain; Chalcone and stilbene synthases, C-terminal domain; COGs: COG3424 naringenin-chalcone synthase; InterPro IPR001099:IPR012328; KEGG: gfo:GFO_1610 naringenin-chalcone synthase; PFAM: Chalcone/stilbene synthase, C-terminal; Chalcone/stilbene synthase, N-terminal; SPTR: Naringenin-chalcone synthase.
 
     0.924
EHQ03903.1
Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: zpr:ZPR_2775 3-oxoacyl-[acyl-carrier-protein] reductase; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: 3-oxoacyl-[acyl-carrier-protein] reductase.
  
  0.911
EHQ04221.1
Methyltransferase type 12; PFAM: Methyltransferase domain; InterPro IPR013217; KEGG: gfo:GFO_1611 SAM-dependent methyltransferase; PFAM: Methyltransferase type 12; SPTR: SAM-dependent methyltransferase.
 
     0.906
EHQ04222.1
PFAM: FAD binding domain; COGs: COG0644 Dehydrogenase (flavoprotein); InterPro IPR003953; KEGG: gfo:GFO_1612 oxidoreductase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; SPTR: Oxidoreductase.
 
     0.893
EHQ03681.1
Enoyl-(acyl-carrier-protein) reductase (NADH); COGs: COG0623 Enoyl-(acyl-carrier-protein); KEGG: gfo:GFO_0653 enoyl-[acyl-carrier-protein] reductase [NADH] 1; SPTR: Enoyl-[acyl-carrier-protein] reductase [NADH].
  
 
 0.888
lpxC
UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
 
  
0.882
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
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