STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ04310.1KEGG: cat:CA2559_09228 serine hydroxymethyltransferase; SPTR: Serine hydroxymethyltransferase. (59 aa)    
Predicted Functional Partners:
EHQ02754.1
KEGG: gfo:GFO_3281 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.757
EHQ01910.1
KEGG: zpr:ZPR_3673 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.746
EHQ04398.1
KEGG: gfo:GFO_0796 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.713
EHQ02268.1
KEGG: gfo:GFO_2874 membrane protein; SPTR: Membrane protein.
  
     0.712
EHQ01647.1
KEGG: zpr:ZPR_1176 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.708
EHQ03787.1
KEGG: gfo:GFO_2299 membrane protein; SPTR: Membrane protein.
  
     0.697
EHQ03054.1
Hypothetical protein; PFAM: Retroviral aspartyl protease; KEGG: gfo:GFO_3081 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.674
EHQ04148.1
KEGG: gfo:GFO_1451 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.674
EHQ03649.1
KEGG: gfo:GFO_0522 secreted protein; SPTR: Secreted protein.
  
     0.669
EHQ04424.1
PFAM: Protein of unknown function (DUF1239); InterPro IPR010664; KEGG: zpr:ZPR_1671 hypothetical protein; PFAM: Protein of unknown function DUF1239; SPTR: Putative uncharacterized protein.
  
     0.641
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.