STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ04320.1LmbE family protein; PFAM: GlcNAc-PI de-N-acetylase; COGs: COG2120 conserved hypothetical protein LmbE homologs; InterPro IPR003737; KEGG: gfo:GFO_1816 secreted protein; PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; SPTR: Secreted protein. (829 aa)    
Predicted Functional Partners:
EHQ04322.1
PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family; COGs: COG0591 Na+/proline symporter; InterPro IPR019900:IPR001734; KEGG: zpr:ZPR_2318 Na+/solute symporter; PFAM: Sodium/solute symporter; SPTR: Na+/solute symporter; TIGRFAM: Sodium/solute symporter, subgroup; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.898
EHQ04324.1
PFAM: Protein of unknown function (DUF2911); KEGG: gfo:GFO_1819 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.769
EHQ02186.1
PFAM: Protein of unknown function (DUF2911); KEGG: gfo:GFO_2751 secreted protein; SPTR: Secreted protein.
  
     0.702
EHQ03646.1
PFAM: Protein of unknown function (DUF2911); KEGG: zpr:ZPR_1076 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.671
EHQ02323.1
PFAM: Protein of unknown function (DUF2911); KEGG: gfo:GFO_2947 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.645
EHQ02734.1
KEGG: cat:CA2559_03365 glutamyl-tRNA synthetase; SPTR: Glutamyl-tRNA synthetase.
  
     0.633
EHQ04318.1
KEGG: gfo:GFO_1814 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.606
EHQ04273.1
KEGG: gfo:GFO_1766 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.598
EHQ04319.1
PFAM: Mechanosensitive ion channel; InterPro IPR006685; KEGG: gfo:GFO_1815 small-conductance mechanosensitive ion channel protein; PFAM: Mechanosensitive ion channel MscS; SPTR: Small-conductance mechanosensitive ion channel protein.
       0.573
bshC
PFAM: Uncharacterized protein conserved in bacteria (DUF2317); TIGRFAM: bacillithiol biosynthesis cysteine-adding enzyme BshC; COGs: COG4365 conserved hypothetical protein; HAMAP: UPF0747 protein; InterPro IPR011199; KEGG: zpr:ZPR_2930 hypothetical protein; PFAM: Uncharacterised conserved protein UCP012535; SPTR: UPF0747 protein ZPR_2930; Belongs to the BshC family.
 
   
 0.563
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.