STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ04468.1PFAM: Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; COGs: COG4927 choloylglycine hydrolase; InterPro IPR005079; KEGG: gfo:GFO_2168 hypothetical protein; PFAM: Peptidase C45, acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; SPTR: Putative uncharacterized protein. (419 aa)    
Predicted Functional Partners:
EHQ04469.1
Biotin carboxylase-like protein; COGs: COG0439 Biotin carboxylase; KEGG: gfo:GFO_2169 biotin carboxylase-like protein; SPTR: Putative uncharacterized protein.
 
     0.899
EHQ04470.1
PFAM: Orn/Lys/Arg decarboxylase, C-terminal domain; Orn/Lys/Arg decarboxylase, major domain; COGs: COG1982 Arginine/lysine/ornithine decarboxylase; InterPro IPR000310:IPR008286; KEGG: gfo:GFO_2170 ornithine/lysine/arginine decarboxylase; PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase, C-terminal; SPTR: Ornithine/lysine/arginine decarboxylase.
 
     0.894
EHQ04472.1
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Carbon-nitrogen hydrolase; COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: gfo:GFO_2172 carbon-nitrogen hydrolase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Carbon-nitrogen hydrolase.
 
     0.879
EHQ04471.1
Glyoxalase/bleomycin resistance protein/dioxygenase; COGs: COG3324 protein related to lactoylglutathione lyase; InterPro IPR004360; KEGG: gfo:GFO_2171 hypothetical protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Putative uncharacterized protein.
 
     0.744
EHQ04473.1
PFAM: Aminotransferase class-III; TIGRFAM: 4-aminobutyrate aminotransferase, prokaryotic type; COGs: COG0160 4-aminobutyrate aminotransferase and related aminotransferase; InterPro IPR005814; KEGG: gfo:GFO_2173 4-aminobutyrate aminotransferase; PFAM: Aminotransferase class-III; SPTR: 4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.724
EHQ04467.1
PFAM: Aldehyde dehydrogenase family; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: gfo:GFO_2167 succinate-semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; SPTR: Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.522
EHQ02935.1
PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG5616 integral membrane protein; InterPro IPR018060:IPR019734:IPR000005:IPR001440; KEGG: fbc:FB2170_05330 putative serine/threonine kinase; PFAM: Helix-turn-helix, AraC type; Tetratricopeptide TPR-1; SMART: Helix-turn-helix, AraC domain; Tetratricopeptide repeat; SPTR: Probable serine/threonine kinase.
  
     0.430
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.