STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ01113.1PFAM: Ribonuclease BN-like family; TIGRFAM: YihY family protein (not ribonuclease BN); COGs: COG1295 membrane protein; InterPro IPR004664; KEGG: gfo:GFO_1489 ribonuclease BN-like family protein; PFAM: Ribonuclease BN-related; SPTR: Ribonuclease BN-like family protein. (331 aa)    
Predicted Functional Partners:
EHQ01112.1
KEGG: fbc:FB2170_10811 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.773
EHQ01144.1
PFAM: Family of unknown function (DUF490); InterPro IPR007452; KEGG: zpr:ZPR_2082 hypothetical protein; PFAM: Protein of unknown function DUF490; SPTR: Putative uncharacterized protein.
 
     0.535
EHQ01114.1
PFAM: DJ-1/PfpI family; TIGRFAM: intracellular protease, PfpI family; COGs: COG0693 Putative intracellular protease/amidase; InterPro IPR006286:IPR002818; KEGG: gfo:GFO_1490 C56 (PfpI) family peptidase; PFAM: ThiJ/PfpI; SPTR: Peptidase, family C56; TIGRFAM: Peptidase C56, PfpI.
  
    0.534
EHQ01145.1
PFAM: Surface antigen; COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR000184; KEGG: zpr:ZPR_2083 surface antigen protein; PFAM: Bacterial surface antigen (D15); SPTR: Surface antigen protein.
 
     0.493
EHQ01111.1
PFAM: HTH domain; AsnC family; COGs: COG1522 Transcriptional regulators; InterPro IPR019888:IPR019887; KEGG: zpr:ZPR_2719 transcription regulator AsnC; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type; SPTR: Transcription regulator AsnC.
       0.441
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
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