STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerCTyrosine recombinase xerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (300 aa)    
Predicted Functional Partners:
EHQ03844.1
Cell division FtsK/SpoIIIE; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family; COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein; InterPro IPR002543:IPR018541; KEGG: gfo:GFO_2183 DNA translocase; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SPTR: DNA translocase.
 
   
 0.620
EHQ01220.1
PFAM: Aldo/keto reductase family; COGs: COG0656 Aldo/keto reductase related to diketogulonate reductase; InterPro IPR001395; KEGG: gfo:GFO_1874 aldo/keto reductase family protein; PFAM: Aldo/keto reductase; SPTR: Aldo/keto reductase family protein.
       0.565
EHQ01218.1
KEGG: kdi:Krodi_0289 hypothetical protein; SPTR: Putative uncharacterized protein.
  
    0.540
EHQ01101.1
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.515
EHQ04389.1
parB-like partition protein; PFAM: ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins; COGs: COG1475 transcriptional regulator protein; InterPro IPR004437:IPR003115; KEGG: gfo:GFO_0805 ParB-like chromosome partition protein; PFAM: ParB-like nuclease; SMART: ParB-like nuclease; SPTR: ParB-like chromosome partition protein; TIGRFAM: ParB-like partition protein; Belongs to the ParB family.
  
  
 0.483
EHQ04388.1
Cobyrinic acid ac-diamide synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; COGs: COG1192 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: kdi:Krodi_0458 chromosome partitioning protein ParA; PFAM: Cobyrinic acid a,c-diamide synthase; SPTR: Chromosome partitioning protein ParA.
  
     0.469
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
  
   
 0.423
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.