STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ01355.1RagB/SusD domain-containing protein; PFAM: SusD family; InterPro IPR012944; KEGG: sli:Slin_3391 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: Putative outer membrane protein. (511 aa)    
Predicted Functional Partners:
EHQ01357.1
PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012910:IPR000531; KEGG: sli:Slin_3390 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: Putative outer membrane protein.
 
   0.919
EHQ02244.1
PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012910:IPR000531; KEGG: zpr:ZPR_0681 outer hypothetical protein, probably involved in nutrient binding; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: Putative outer membrane protein, probably involved in nutrient binding.
 
   0.869
EHQ03198.1
PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: pdn:HMPREF9137_0662 TonB-linked outer membrane protein SusC/RagA family; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: Putative outer membrane protein.
 
 
   0.796
EHQ01354.1
PFAM: Glycosyl hydrolases family 43; COGs: COG3940 beta-xylosidase; InterPro IPR006710; KEGG: sli:Slin_3393 alpha-N-arabinofuranosidase; PFAM: Glycoside hydrolase, family 43; SPTR: Putative hydrolase; Belongs to the glycosyl hydrolase 43 family.
 
     0.706
EHQ03191.1
PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012910:IPR000531; KEGG: rmr:Rmar_2082 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: Putative outer membrane protein, probably involved in nutrient binding.
 
 
   0.682
EHQ04069.1
PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: zpr:ZPR_2449 TonB-dependent outer membrane receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent outer membrane receptor.
 
   0.679
EHQ02302.1
KEGG: lby:Lbys_1875 hypothetical protein; SPTR: Putative uncharacterized protein.
  
 
   0.626
EHQ01705.1
Secretin/TonB short domain-containing protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR011662; KEGG: zpr:ZPR_0253 TonB-dependent receptor Plug domain protein; PFAM: Secretin/TonB, short N-terminal; SPTR: TonB-dependent Receptor Plug domain protein; manually curated.
  
 
   0.621
EHQ02866.1
PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; PEGA domain; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR013229:IPR012910:IPR000531; KEGG: fjo:Fjoh_1314 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; PEGA; SPTR: SusC-like TonB-dependent receptor.
  
 
   0.619
EHQ01356.1
Transposase IS200-family protein; PFAM: Transposase IS200 like; COGs: COG1943 Transposase and inactivated derivatives; InterPro IPR002686; KEGG: pph:Ppha_1416 transposase IS200-family protein; PFAM: Transposase IS200-like; SPTR: Genome sequencing data, contig C243.
       0.603
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
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