STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ01563.1Integrase catalytic region; PFAM: Integrase core domain; InterPro IPR001584; KEGG: cao:Celal_1706 integrase catalytic region; PFAM: Integrase, catalytic core; SPTR: Putative uncharacterized protein. (262 aa)    
Predicted Functional Partners:
EHQ01562.1
Transposase IS3/IS911 family protein; PFAM: Transposase; InterPro IPR002514; KEGG: zpr:ZPR_3321 transposase orf-A, IS-type; PFAM: Transposase IS3/IS911; SPTR: Transposase orf-A, IS-type.
 
   
 0.920
EHQ03492.1
Heat shock protein Hsp15; PFAM: S4 domain; COGs: COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog); InterPro IPR002942; KEGG: gfo:GFO_2404 RNA-binding S4 domain-containing protein; PFAM: RNA-binding S4; SMART: RNA-binding S4; SPTR: Protein containing RNA-binding S4 domain.
    
   0.410
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
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