STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ01587.1KEGG: gfo:GFO_1366 membrane protein; SPTR: Membrane protein; manually curated. (94 aa)    
Predicted Functional Partners:
EHQ01583.1
KEGG: zpr:ZPR_1772 conserved protein found in conjugate transposon TraK; SPTR: Conserved protein found in conjugate transposon TraK.
    
 0.825
EHQ01586.1
Conjugation system ATPase, TraG family; PFAM: Domain of unknown function DUF87; TIGRFAM: Bacteroides conjugation system ATPase, TraG family; COGs: COG3451 Type IV secretory pathway VirB4 protein; KEGG: zpr:ZPR_1775 TraG-like protein; SPTR: TraG-like protein; TIGRFAM: Bacteroides conjugation system ATPase, TraG family.
       0.773
EHQ01588.1
KEGG: zpr:ZPR_4001 hypothetical protein; SPTR: Membrane protein.
       0.773
EHQ01585.1
TraI-like secreted protein; PFAM: Type IV secretion system proteins; KEGG: gfo:GFO_1364 TraI-like secreted protein; SPTR: Conserved protein found in conjugate transposon.
       0.764
EHQ01584.1
KEGG: zpr:ZPR_1773 hypothetical protein; SPTR: Membrane protein.
       0.763
EHQ01589.1
Cell wall hydrolase/autolysin; PFAM: N-acetylmuramoyl-L-alanine amidase; COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: gfo:GFO_1368 N-acetylmuramoyl-L-alanine amidase; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic; SPTR: N-acetylmuramoyl-L-alanine amidase.
       0.501
EHQ01582.1
PFAM: Protein of unknown function (DUF3714); KEGG: zpr:ZPR_1771 TraM-like protein; SPTR: TraM-like protein.
       0.494
EHQ01581.1
KEGG: zpr:ZPR_1770 conserved protein found in conjugate transposon TraN; SPTR: Conserved protein found in conjugate transposon TraN.
       0.442
EHQ01580.1
KEGG: zpr:ZPR_4119 hypothetical protein; SPTR: Membrane or secreted protein.
       0.437
rplS
LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
    
   0.422
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.