STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ01590.1AAA ATPase; PFAM: NACHT domain; InterPro IPR003593; KEGG: vfi:VF_A0705 hypothetical protein; SMART: ATPase, AAA+ type, core; SPTR: Putative uncharacterized protein. (2150 aa)    
Predicted Functional Partners:
EHQ03888.1
KEGG: rbi:RB2501_15324 hypothetical protein; SPTR: Putative uncharacterized protein.
   
 0.818
EHQ01591.1
KEGG: fjo:Fjoh_3534 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.781
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.713
EHQ01592.1
KEGG: fps:FP1558 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.658
rnhB
RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
   
  
 0.561
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
  0.552
cobB
PFAM: Sir2 family; COGs: COG0846 NAD-dependent protein deacetylase SIR2 family; HAMAP: NAD-dependent deacetylase; InterPro IPR003000; KEGG: gfo:GFO_1094 NAD-dependent deacetylase; PFAM: NAD-dependent histone deacetylase, silent information regulator Sir2; SPTR: NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
    
 
 0.544
EHQ04138.1
Protein of unknown function DUF179; PFAM: Uncharacterized ACR, COG1678; COGs: COG1678 Putative transcriptional regulator protein; InterPro IPR003774; KEGG: gfo:GFO_1442 hypothetical protein; PFAM: Protein of unknown function DUF179; SPTR: Putative uncharacterized protein; Belongs to the UPF0301 (AlgH) family.
   
    0.540
EHQ01589.1
Cell wall hydrolase/autolysin; PFAM: N-acetylmuramoyl-L-alanine amidase; COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: gfo:GFO_1368 N-acetylmuramoyl-L-alanine amidase; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic; SPTR: N-acetylmuramoyl-L-alanine amidase.
       0.455
EHQ03007.1
ATP dependent helicase, Lhr family; PFAM: Helicase conserved C-terminal domain; DEAD/H associated; DEAD/DEAH box helicase; COGs: COG1201 Lhr-like helicase; InterPro IPR014001:IPR001650:IPR011545:IPR013701; KEGG: gfo:GFO_3528 DEAD box helicase family protein; PFAM: DEAD/H associated; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: DEAD box helicase family protein.
   
   0.416
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
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