STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ01669.1Helix-hairpin-helix DNA-binding class 1; InterPro IPR003583; KEGG: lan:Lacal_1814 hypothetical protein; SMART: Helix-hairpin-helix DNA-binding motif, class 1; SPTR: Putative uncharacterized protein. (292 aa)    
Predicted Functional Partners:
EHQ01670.1
Amino acid carrier protein; PFAM: Sodium:alanine symporter family; TIGRFAM: amino acid carrier protein; COGs: COG1115 Na+/alanine symporter; InterPro IPR001463; KEGG: gfo:GFO_2391 sodium:alanine symporter family protein; PFAM: Sodium:alanine symporter; SPTR: Sodium:alanine symporter family protein; TIGRFAM: Sodium:alanine symporter.
       0.773
EHQ01672.1
PFAM: Protein of unknown function (DUF2851); KEGG: lan:Lacal_1810 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.764
EHQ02344.1
PFAM: Competence protein; TIGRFAM: ComEC/Rec2-related protein; COGs: COG0658 membrane metal-binding protein; InterPro IPR004477; KEGG: gfo:GFO_2968 competence protein; PFAM: ComEC/Rec2-related protein; SPTR: Competence protein; TIGRFAM: ComEC/Rec2-related protein.
 
  
 0.758
EHQ02782.1
PFAM: DNA recombination-mediator protein A; TIGRFAM: DNA protecting protein DprA; COGs: COG0758 Rossmann fold nucleotide-binding protein involved in DNA uptake; InterPro IPR003488; KEGG: gfo:GFO_3252 smf family protein; PFAM: DNA recombination-mediator protein A; SPTR: Smf family protein; TIGRFAM: DNA recombination-mediator protein A.
 
  
 0.736
EHQ03062.1
KEGG: zpr:ZPR_4541 hypothetical protein; SPTR: Secreted protein.
  
     0.630
EHQ04297.1
KEGG: cat:CA2559_08131 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.621
EHQ02517.1
Phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: comF family protein; COGs: COG1040 amidophosphoribosyltransferase; InterPro IPR000836; KEGG: gfo:GFO_3532 phosphoribosyltransferases family protein; PFAM: Phosphoribosyltransferase; SPTR: Phosphoribosyltransferases family protein.
 
  
 0.621
EHQ01687.1
PFAM: Tetratricopeptide repeat; COGs: COG1729 conserved hypothetical protein; InterPro IPR001440:IPR019734; KEGG: gfo:GFO_2543 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: Putative uncharacterized protein.
 
     0.597
EHQ01646.1
KEGG: zpr:ZPR_1179 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.586
EHQ04400.1
KEGG: gfo:GFO_0794 TPR repeat-containing protein; SPTR: Protein containing tetratricopeptide repeats.
  
     0.585
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.