Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EHQ01692.1PFAM: BCCT family transporter; TIGRFAM: choline/carnitine/betaine transport; COGs: COG1292 Choline-glycine betaine transporter; InterPro IPR000060; KEGG: zpr:ZPR_3532 choline/carnitine/betaine transport; PFAM: BCCT transporter; SPTR: Choline/carnitine/betaine transport; TIGRFAM: BCCT transporter; Belongs to the BCCT transporter (TC 2.A.15) family. (541 aa)    
Predicted Functional Partners:
EHQ01693.1
UspA domain-containing protein; PFAM: Universal stress protein family; InterPro IPR006016; KEGG: gfo:GFO_2553 universal stress protein family protein; PFAM: UspA; SPTR: Universal stress protein family.
 
     0.893
EHQ01691.1
KEGG: gfo:GFO_2551 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.832
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
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