STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ01853.1KEGG: gfo:GFO_1304 secreted protein; SPTR: Secreted protein. (78 aa)    
Predicted Functional Partners:
EHQ01852.1
PFAM: Outer membrane efflux protein; COGs: COG1538 Outer membrane protein; KEGG: gfo:GFO_1303 outer membrane efflux protein; SPTR: Outer membrane efflux protein.
       0.728
EHQ01851.1
KEGG: zpr:ZPR_4282 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.527
EHQ01854.1
TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143:IPR000089; KEGG: gfo:GFO_1305 HlyD family secretion protein; PFAM: Secretion protein HlyD; Biotin/lipoyl attachment; SPTR: HlyD family secretion protein; TIGRFAM: Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.522
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.