STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ02183.1KEGG: gfo:GFO_2748 hypothetical protein; SPTR: Putative uncharacterized protein. (326 aa)    
Predicted Functional Partners:
EHQ01450.1
KEGG: gfo:GFO_2063 membrane or secreted protein; SPTR: Membrane or secreted protein.
  
     0.715
EHQ01989.1
Hypothetical protein; InterPro IPR003599; KEGG: gfo:GFO_0394 immunoglobulin-like domain-containing protein; SPTR: Protein containing immunoglobulin-like domain.
  
     0.692
EHQ01738.1
PFAM: Glycosyl transferase family 2; InterPro IPR001173; KEGG: gfo:GFO_0567 glycosyl transferase family protein; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase, family 2.
  
     0.658
EHQ01451.1
Hypothetical protein; InterPro IPR003367; KEGG: gfo:GFO_2062 membrane or secreted protein; SPTR: Membrane or secreted protein.
  
     0.601
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
       0.595
EHQ04157.1
KEGG: gfo:GFO_1460 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.592
EHQ01733.1
PFAM: Glycosyl transferase family 2; InterPro IPR001173; KEGG: gfo:GFO_0576 glycosyl transferase family protein; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase, family 2; overlaps another CDS with the same product name.
  
     0.582
gyrB
DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
       0.550
EHQ01392.1
GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family; InterPro IPR000182; KEGG: gfo:GFO_2001 hypothetical protein; PFAM: GCN5-related N-acetyltransferase; SPTR: Putative uncharacterized protein.
  
     0.549
EHQ01760.1
Methyltransferase type 11; PFAM: Methyltransferase domain; InterPro IPR013216; KEGG: gfo:GFO_0544 methyltransferase; PFAM: Methyltransferase type 11; SPTR: Putative uncharacterized protein.
  
     0.543
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.